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1

Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease

Lees-Miller, James P., Cobban, Alexander, Katsonis, Panagiotis, Bacolla, Albino, Tsutakawa, Susan E., Hammel, Michal, Meek, Katheryn, Anderson, Dave W., Lichtarge, Olivier, Tainer, John A., Lees-Mille

Journal:

Progress in Biophysics and Molecular Biology

Year:

2020

File:

PDF, 70.03 MB

2020

2

Procalcitonin in detecting neonatal nosocomial sepsis

Auriti, C., Fiscarelli, E., Ronchetti, M. P., Argentieri, M., Marrocco, G., Quondamcarlo, A., Seganti, G., Bagnoli, F., Buonocore, G., Serra, G., Bacolla, G., Mastropasqua, S., Mari, A., Corchia, C.,

Journal:

Archives of Disease in Childhood - Fetal and Neonatal Edition

Year:

2012

Language:

english

File:

PDF, 113 KB

english, 2012

3

Human DHX9 Helicase Unwinds Triple-Helical DNA Structures

Jain, Aklank, Bacolla, Albino, Chakraborty, Prasun, Grosse, Frank, Vasquez, Karen M.

Journal:

Year:

2010

Language:

english

File:

PDF, 4.66 MB

english, 2010

4

Non-B DNA structure-induced genetic instability and evolution

Junhua Zhao, Albino Bacolla, Guliang Wang, Karen M. Vasquez

Journal:

Cellular and Molecular Life Sciences

Year:

2010

Language:

english

File:

PDF, 647 KB

english, 2010

5

Sticky DNA: in Vivo Formation in E. coli and in Vitro Association of Long GAA•TTC Tracts to Generate Two Independent Supercoiled Domains

Leslie S. Son, Albino Bacolla, Robert D. Wells

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1022 KB

english, 2006

6

Insufficiency of goiter prophylaxis by means of the iodinated salt actually available and under a voluntary basis

A. Costa,V. De Filippis,A. Bacolla…

Journal:

Journal of Endocrinological Investigation

Year:

1986

Language:

english

File:

PDF, 225 KB

english, 1986

7

The somatic autosomal mutation matrix in cancer genomes

Temiz, Nuri A., Donohue, Duncan E., Bacolla, Albino, Vasquez, Karen M., Cooper, David N., Mudunuri, Uma, Ivanic, Joseph, Cer, Regina Z., Yi, Ming, Stephens, Robert M., Collins, Jack R., Luke, Brian T.

Journal:

Year:

2015

Language:

english

File:

PDF, 543 KB

english, 2015

8

Flexible DNA: Genetically Unstable CTG{middle dot}CAG and CGG{middle dot}CCG from Human Hereditary Neuromuscular Disease Genes

Bacolla, A., Gellibolian, R., Shimizu, M., Amirhaeri, S., Kang, S., Ohshima, K., Larson, J. E., Harvey, S. C., Stollar, B. D., Wells, R. D.

Journal:

Journal of Biological Chemistry

Year:

1997

Language:

english

File:

PDF, 1009 KB

english, 1997

9

Gene conversion causing human inherited disease: Evidence for involvement of non-B-DNA-forming sequences and recombination-promoting motifs in DNA breakage and repair

Nadia Chuzhanova, Jian-Min Chen, Albino Bacolla, George P. Patrinos, Claude Férec, Robert D. Wells, David N. Cooper

Journal:

Year:

2009

Language:

english

File:

PDF, 208 KB

english, 2009

10

Triplet Repeat Instability and DNA Topology: An Expansion Model Based on Statistical Mechanics

Gellibolian, R., Bacolla, A., Wells, R. D.

Journal:

Journal of Biological Chemistry

Year:

1997

Language:

english

File:

PDF, 780 KB

english, 1997

11

ReplicationâBased Rearrangements Are a Common Mechanism for SNCA Duplication in Parkinson's Disease

Seo, Soo Hyun, Bacolla, Albino, Yoo, Dallah, Koo, Yoon Jung, Cho, Sung Im, Kim, Man Jin, Seong, MoonâWoo, Kim, HanâJoon, Kim, JongâMin, Tainer, John A., Park, Sung Sup, Kim, Ji Yeon, Jeon, Beoms

Journal:

Movement Disorders

Year:

2020

File:

PDF, 1.35 MB

2020

12

Chimeric human immunodeficiency virus type 1/type 2 reverse transcriptases display reversed sensitivity to nonnucleoside analog inhibitors.

Shih, C. K., Rose, J. M., Hansen, G. L., Wu, J. C., Bacolla, A., Griffin, J. A.

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 1.05 MB

english, 1991

13

Recombinant Human DNA (Cytosine-5) Methyltransferase: II. STEADY-STATE KINETICS REVEAL ALLOSTERIC ACTIVATION BY METHYLATED DNA

Bacolla, A., Pradhan, S., Roberts, R. J., Wells, R. D.

Journal:

Journal of Biological Chemistry

Year:

1999

Language:

english

File:

PDF, 704 KB

english, 1999

14

Non-B DNA-forming Sequences and WRN Deficiency Independently Increase the Frequency of Base Substitution in Human Cells

Bacolla, A., Wang, G., Jain, A., Chuzhanova, N. A., Cer, R. Z., Collins, J. R., Cooper, D. N., Bohr, V. A., Vasquez, K. M.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 2.36 MB

english, 2011

15

Mechanisms of Base Substitution Mutagenesis in Cancer Genomes

Bacolla, Albino, Cooper, David, Vasquez, Karen

Journal:

Year:

2014

Language:

english

File:

PDF, 559 KB

english, 2014

16

Cruciform-forming inverted repeats appear to have mediated many of the microinversions that distinguish the human and chimpanzee genomes

Jessica Kolb, Nadia A. Chuzhanova, Josef Högel, Karen M. Vasquez, David N. Cooper, Albino Bacolla, Hildegard Kehrer-Sawatzki

Journal:

Chromosome Research

Year:

2009

Language:

english

File:

PDF, 288 KB

english, 2009

17

DNA damage response mechanisms and structures fundamental to cancer research progress

Bacolla, Albino, Tainer, John A.

Journal:

Progress in Biophysics and Molecular Biology

Year:

2019

Language:

english

File:

PDF, 174 KB

english, 2019

18

Encyclopedia of Biological Chemistry || DNA Secondary Structure

Year:

2013

Language:

english

File:

PDF, 349 KB

english, 2013

19

Chimeric Human Immunodeficiency Virus Type 1/Type 2 Reverse Transcriptases Display Reversed Sensitivity to Nonnucleoside Analog Inhibitors

Cheng-Kon Shih, Janice M. Rose, Gale L. Hansen, Joe C. Wu, Albino Bacolla and Johanna A. Griffin

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 837 KB

english, 1991

20

Local DNA dynamics shape mutational patterns of mononucleotide repeats in human genomes

Bacolla, A., Zhu, X., Chen, H., Howells, K., Cooper, D. N., Vasquez, K. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 7.27 MB

english, 2015

21

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools

Cer, R. Z., Donohue, D. E., Mudunuri, U. S., Temiz, N. A., Loss, M. A., Starner, N. J., Halusa, G. N., Volfovsky, N., Yi, M., Luke, B. T., Bacolla, A., Collins, J. R., Stephens, R. M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 6.91 MB

english, 2013

22

Erratum to: The somatic autosomal mutation matrix in cancer genomes

Temiz, Nuri A., Donohue, Duncan E., Bacolla, Albino, Vasquez, Karen M., Cooper, David N., Mudunuri, Uma, Ivanic, Joseph, Cer, Regina Z., Yi, Ming, Stephens, Robert M., Collins, Jack R., Luke, Brian T.

Journal:

Year:

2015

Language:

english

File:

PDF, 354 KB

english, 2015

23

Long non-coding RNA: A new paradigm for lung cancer

Khandelwal, Akanksha, Bacolla, Albino, Vasquez, Karen M, Jain, Aklank

Journal:

Molecular Carcinogenesis

Year:

2015

Language:

english

File:

PDF, 2.23 MB

english, 2015

24

The Myotonic Dystrophy Type 1 Triplet Repeat Sequence Induces Gross Deletions and Inversions

Wojciechowska, M., Bacolla, A., Larson, J. E., Wells, R. D.

Journal:

Journal of Biological Chemistry

Year:

2005

Language:

english

File:

PDF, 769 KB

english, 2005

25

A recurrent 8 bp frameshifting indel in FOXF1 defines a novel mutation hotspot associated with alveolar capillary dysplasia with misalignment of pulmonary veins

Karolak, Justyna A., Bacolla, Albino, Liu, Qian, Lantz, Patrick E., Petty, John, Trapane, Pamela, Panzer, Karin, Totapally, Balagangadhar R., Niu, Zhiyv, Xiao, Rui, Xie, Nina G., Wu, Lucia R., Szafran

Journal:

American Journal of Medical Genetics Part A

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

26

Histone acetyl transferase MOF orchestrates outcomes at the crossroad of oncogenesis, DNA damage response, proliferation, and stem cell development

Singh, Mayank, Bacolla, Albino, Chaudhary, Shilpi, Hunt, Clayton R, Pandita, Shruti, Chauhan, Ravi, Gupta, Ashna, Tainer, John A, Pandita, Tej K

Journal:

Molecular and Cellular Biology

Year:

2020

File:

PDF, 1.61 MB

2020

27

Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death

Houl, Jerry H., Ye, Zu, Brosey, Chris A., Balapiti-Modarage, Lakshitha P. F., Namjoshi, Sarita, Bacolla, Albino, Laverty, Daniel, Walker, Brian L., Pourfarjam, Yasin, Warden, Leslie S., Babu Chinnam,

Journal:

Nature Communications

Year:

2019

File:

PDF, 4.52 MB

2019

28

XRCC1 promotes replication restart, nascent fork degradation and mutagenic DNA repair in BRCA2-deficient cells

Eckelmann, Bradley J, Bacolla, Albino, Wang, Haibo, Ye, Zu, Guerrero, Erika N, Jiang, Wei, El-Zein, Randa, Hegde, Muralidhar L, Tomkinson, Alan E, Tainer, JohnÂ A, Mitra, Sankar

Journal:

Year:

2020

File:

PDF, 4.59 MB

2020

29

Encyclopedia of Life Sciences || Non-B DNA Structure and Mutations Causing Human Genetic Disease

Bacolla, Albino

Year:

2001

Language:

english

File:

PDF, 653 KB

english, 2001

30

Identification of a cAMP-responsive region in thyroglobulin gene promoter

Christophe, D., Gérard, C., Juvenal, G., Bacolla, A., Teugels, E., Ledent, C., Christophe-Hobertus, C., Dumont, J.E., Vassart, G.

Journal:

Molecular and Cellular Endocrinology

Year:

1989

Language:

english

File:

PDF, 2.51 MB

english, 1989

31

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences

Bacolla, Albino, Tainer, John A., Vasquez, Karen M., Cooper, David N.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 5.01 MB

english, 2016

32

Free and Bound Tryptophan in Human Milk during Early Lactation

Zanardo, V., Bacolla, G., Biasiolo, M., Allegri, G.

Journal:

Year:

1989

Language:

english

File:

PDF, 347 KB

english, 1989

33

Non-B DNA Conformations, Genomic Rearrangements, and Human Disease

Journal:

Journal of Biological Chemistry

Year:

2004

Language:

english

File:

PDF, 210 KB

english, 2004

34

Procalcitonin in detecting neonatal nosocomial sepsis

Auriti, C., Fiscarelli, E., Ronchetti, M. P., Argentieri, M., Marrocco, G., Quondamcarlo, A., Seganti, G., Bagnoli, F., Buonocore, G., Serra, G., Bacolla, G., Mastropasqua, S., Mari, A., Corchia, C.,

Journal:

Archives of Disease in Childhood - Fetal and Neonatal Edition

Year:

2011

Language:

english

File:

PDF, 204 KB

english, 2011

35

On the sequence-directed nature of human gene mutation: The role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease

David N. Cooper, Albino Bacolla, Claude Férec, Karen M. Vasquez, Hildegard Kehrer-Sawatzki, Jian-Min Chen

Journal:

Year:

2011

Language:

english

File:

PDF, 643 KB

english, 2011

36

Recombinant Human DNA (Cytosine-5) Methyltransferase: I. EXPRESSION, PURIFICATION, AND COMPARISON OF DE NOVO AND MAINTENANCE METHYLATION

Pradhan, S., Bacolla, A., Wells, R. D., Roberts, R. J.

Journal:

Journal of Biological Chemistry

Year:

1999

Language:

english

File:

PDF, 685 KB

english, 1999

37

The involvement of non-B DNA structures in gross chromosomal rearrangements

Albino Bacolla, Marzena Wojciechowska, Beata Kosmider, Jacquelynn E. Larson, Robert D. Wells

Journal:

Year:

2006

Language:

english

File:

PDF, 340 KB

english, 2006

38

Breakpoints of gross deletions coincide with non-B DNA conformations

Bacolla, A., Jaworski, A., Larson, J. E., Jakupciak, J. P., Chuzhanova, N., Abeysinghe, S. S., O'Connell, C. D., Cooper, D. N., Wells, R. D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2004

Language:

english

File:

PDF, 479 KB

english, 2004

39

RNA Modifications: Reversal Mechanisms And Cancer

Thapar, Roopa, Bacolla, Albino, Oyeniran, Clement, Brickner, Joshua, Chinnam, Naga Babu, Mosammaparast, Nima, Tainer, John

Journal:

Year:

2018

Language:

english

File:

PDF, 3.70 MB

english, 2018

40

Structure, expression and regulation of the thyroglobulin gene

Vassart, Gilbert, Bacolla, Albino, Brocas, Huguette, Christophe, Daniel, de Martynoff, Guy, Leriche, Anne, Mercken, Luc, Parma, Jasmine, Pohl, Viviane, Targovnik, Hector

Journal:

Molecular and Cellular Endocrinology

Year:

1985

Language:

english

File:

PDF, 989 KB

english, 1985

41

Recombinant Human DNA (Cytosine-5) Methyltransferase. III. ALLOSTERIC CONTROL, REACTION ORDER, AND INFLUENCE OF PLASMID TOPOLOGY AND TRIPLET REPEAT LENGTH ON METHYLATION OF THE FRAGILE X CGGmiddle dotCCG SEQUENCE

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 701 KB

english, 2001

42

PKD1 Unusual DNA Conformations Are Recognized by Nucleotide Excision Repair

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 721 KB

english, 2001

43

Guanine Holes Are Prominent Targets for Mutation in Cancer and Inherited Disease

Bacolla, Albino, Temiz, Nuri A., Yi, Ming, Ivanic, Joseph, Cer, Regina Z., Donohue, Duncan E., Ball, Edward V., Mudunuri, Uma S., Wang, Guliang, Jain, Aklank, Volfovsky, Natalia, Luke, Brian T., Steph

Journal:

Year:

2013

Language:

english

File:

PDF, 640 KB

english, 2013

44

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region

Bacolla, A., Collins, J. R., Gold, B., Chuzhanova, N., Yi, M., Stephens, R. M., Stefanov, S., Olsh, A., Jakupciak, J. P., Dean, M., Lempicki, R. A., Cooper, D. N., Wells, R. D.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 382 KB

english, 2006

45

Small Slipped Register Genetic Instabilities in Escherichia coli in Triplet Repeat Sequences Associated with Hereditary Neurological Diseases

Wells, R. D., Parniewski, P., Pluciennik, A., Bacolla, A., Gellibolian, R., Jaworski, A.

Journal:

Journal of Biological Chemistry

Year:

1998

Language:

english

File:

PDF, 792 KB

english, 1998

46

Mung bean nuclease cleavage pattern at a polypurine-polypyrimidine sequence upstream from the mouse metallothionein-I gene

Bacolla, Albino, Wu, Felicia Y.-H.

Journal:

Nucleic Acids Research

Year:

1991

Language:

english

File:

PDF, 1.53 MB

english, 1991

47

A Role for Non-B DNA Forming Sequences in Mediating Microlesions Causing Human Inherited Disease

Kamat, Mihir Anant, Bacolla, Albino, Cooper, David N, Chuzhanova, Nadia

Journal:

Year:

2016

Language:

english

File:

PDF, 738 KB

english, 2016

48

48. Value of color scintiscanning in the diagnosis of cerebral, renal, and hepatic neoplasias in pediatrics

Mussa, G C, Mauri, M Martini, Bacolla, D

Journal:

Pediatric Research

Year:

1971

Language:

english

File:

PDF, 101 KB

english, 1971

49

An unusually long poly(purine)-poly(pyrimidine) sequence is located upstream from the human thyroglobulin gene

Christophe, D., Cabrer, B., Bacolla, A., Targovnik, H., Pohl, V., Vassart, G.

Journal:

Nucleic Acids Research

Year:

1985

Language:

english

File:

PDF, 1.40 MB

english, 1985

50

Genetic Instabilities and Neurological Diseases || Gross Rearrangements Caused by Long Triplet and Other Repeat Sequences

BACOLLA, ALBINO

Year:

2006

Language:

english

File:

PDF, 1.76 MB

english, 2006

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